[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 3,117 items for (author: john & v)

EMDB-43753:
Yeast U1 snRNP with humanized U1C Zinc-Finger domain
Method: single particle / : Shi SS, Kuang ZL, Zhao R

PDB-8w2o:
Yeast U1 snRNP with humanized U1C Zinc-Finger domain
Method: single particle / : Shi SS, Kuang ZL, Zhao R

EMDB-41088:
SpRY-Cas9:gRNA complex bound to non-target DNA with 10 bp R-loop
Method: single particle / : Hibshman GN, Bravo JPK, Taylor DW

PDB-8t79:
SpRY-Cas9:gRNA complex bound to non-target DNA with 10 bp R-loop
Method: single particle / : Hibshman GN, Bravo JPK, Taylor DW

EMDB-17779:
Structure of human oligosaccharyltransferase OST-A complex bound to NGI-1
Method: single particle / : Ramirez AS, Kowal J, Locher KP

PDB-8pn9:
Structure of human oligosaccharyltransferase OST-A complex bound to NGI-1
Method: single particle / : Ramirez AS, Kowal J, Locher KP

EMDB-40681:
SpRY-Cas9:gRNA complex targeting TGG PAM DNA
Method: single particle / : Hibshman GN, Bravo JPK, Taylor DW

EMDB-40705:
SpRY-Cas9:gRNA complex targeting TTC PAM DNA
Method: single particle / : Hibshman GN, Bravo JPK, Taylor DW

EMDB-40740:
SpRY-Cas9:gRNA complex targeting TAC PAM DNA
Method: single particle / : Hibshman GN, Bravo JPK, Taylor DW

EMDB-41073:
SpRY-Cas9:gRNA complex targeting TAC PAM DNA with 0 bp R-loop
Method: single particle / : Hibshman GN, Bravo JPK, Taylor DW

EMDB-41074:
SpRY-Cas9:gRNA complex targeting TAC PAM DNA with 2 bp R-loop
Method: single particle / : Hibshman GN, Bravo JPK, Taylor DW

EMDB-41079:
SpRY-Cas9:gRNA complex targeting TAC PAM DNA with 10 bp R-loop
Method: single particle / : Hibshman GN, Bravo JPK, Taylor DW

EMDB-41080:
SpRY-Cas9:gRNA complex targeting TAC PAM DNA with 13 bp R-loop
Method: single particle / : Hibshman GN, Bravo JPK, Taylor DW

EMDB-41083:
SpRY-Cas9:gRNA complex targeting TAC PAM DNA with 18 bp R-loop
Method: single particle / : Hibshman GN, Bravo JPK, Taylor DW

EMDB-41084:
SpRY-Cas9:gRNA complex bound to non-target DNA with 1 bp R-loop
Method: single particle / : Hibshman GN, Bravo JPK, Taylor DW

EMDB-41085:
SpRY-Cas9:gRNA complex targeting TAC PAM DNA with 3 bp R-loop
Method: single particle / : Hibshman GN, Bravo JPK, Taylor DW

EMDB-41086:
SpRY-Cas9:gRNA complex bound to non-target DNA with 6 bp R-loop
Method: single particle / : Hibshman GN, Bravo JPK, Taylor DW

EMDB-41087:
SpRY-Cas9:gRNA complex bound to non-target DNA with 8 bp R-loop
Method: single particle / : Hibshman GN, Bravo JPK, Taylor DW

EMDB-41093:
SpRYmer bound to NAC PAM DNA
Method: single particle / : Hibshman GN, Bravo JPK, Taylor DW

EMDB-41775:
SpG Cas9 with NGC PAM DNA target
Method: single particle / : Bravo JPK, Hibshman GN, Taylor DW

EMDB-41867:
SpG Cas9 with NGG PAM DNA target
Method: single particle / : Bravo JPK, Hibshman GN, Taylor DW

PDB-8spq:
SpRY-Cas9:gRNA complex targeting TGG PAM DNA
Method: single particle / : Hibshman GN, Bravo JPK, Taylor DW

PDB-8sqh:
SpRY-Cas9:gRNA complex targeting TTC PAM DNA
Method: single particle / : Hibshman GN, Bravo JPK, Taylor DW

PDB-8srs:
SpRY-Cas9:gRNA complex targeting TAC PAM DNA
Method: single particle / : Hibshman GN, Bravo JPK, Taylor DW

PDB-8t6o:
SpRY-Cas9:gRNA complex targeting TAC PAM DNA with 0 bp R-loop
Method: single particle / : Hibshman GN, Bravo JPK, Taylor DW

PDB-8t6p:
SpRY-Cas9:gRNA complex targeting TAC PAM DNA with 2 bp R-loop
Method: single particle / : Hibshman GN, Bravo JPK, Taylor DW

PDB-8t6s:
SpRY-Cas9:gRNA complex targeting TAC PAM DNA with 10 bp R-loop
Method: single particle / : Hibshman GN, Bravo JPK, Taylor DW

PDB-8t6t:
SpRY-Cas9:gRNA complex targeting TAC PAM DNA with 13 bp R-loop
Method: single particle / : Hibshman GN, Bravo JPK, Taylor DW

PDB-8t6x:
SpRY-Cas9:gRNA complex targeting TAC PAM DNA with 18 bp R-loop
Method: single particle / : Hibshman GN, Bravo JPK, Taylor DW

PDB-8t6y:
SpRY-Cas9:gRNA complex bound to non-target DNA with 1 bp R-loop
Method: single particle / : Hibshman GN, Bravo JPK, Taylor DW

PDB-8t76:
SpRY-Cas9:gRNA complex targeting TAC PAM DNA with 3 bp R-loop
Method: single particle / : Hibshman GN, Bravo JPK, Taylor DW

PDB-8t77:
SpRY-Cas9:gRNA complex bound to non-target DNA with 6 bp R-loop
Method: single particle / : Hibshman GN, Bravo JPK, Taylor DW

PDB-8t78:
SpRY-Cas9:gRNA complex bound to non-target DNA with 8 bp R-loop
Method: single particle / : Hibshman GN, Bravo JPK, Taylor DW

PDB-8t7s:
SpRYmer bound to NAC PAM DNA
Method: single particle / : Hibshman GN, Bravo JPK, Taylor DW

PDB-8tzz:
SpG Cas9 with NGC PAM DNA target
Method: single particle / : Bravo JPK, Hibshman GN, Taylor DW

PDB-8u3y:
SpG Cas9 with NGG PAM DNA target
Method: single particle / : Bravo JPK, Hibshman GN, Taylor DW

EMDB-18664:
Structure of the native microtubule lattice nucleated from the yeast spindle pole body
Method: subtomogram averaging / : Dendooven T, Yatskevich S, Burt A, Bellini D, Kilmartin J, Barford D

EMDB-18665:
Structure of the native y-Tubulin Ring Complex (yTuRC) capping microtubule minus ends at the spindle pole body
Method: subtomogram averaging / : Dendooven T, Yatskevich S, Burt A, Bellini D, Kilmartin J, Barford D

EMDB-18666:
Structure of the y-Tubulin Small Complex (yTuSC) as part of the native y-Tubulin Ring Complex (yTuRC) capping microtubule minus ends at the spindle pole body
Method: subtomogram averaging / : Dendooven T, Yatskevich S, Burt A, Bellini D, Kilmartin J, Barford D

PDB-8qv0:
Structure of the native microtubule lattice nucleated from the yeast spindle pole body
Method: subtomogram averaging / : Dendooven T, Yatskevich S, Burt A, Bellini D, Kilmartin J, Barford D

PDB-8qv2:
Structure of the native y-Tubulin Ring Complex (yTuRC) capping microtubule minus ends at the spindle pole body
Method: subtomogram averaging / : Dendooven T, Yatskevich S, Burt A, Bellini D, Kilmartin J, Barford D

PDB-8qv3:
Structure of the y-Tubulin Small Complex (yTuSC) as part of the native y-Tubulin Ring Complex (yTuRC) capping microtubule minus ends at the spindle pole body
Method: subtomogram averaging / : Dendooven T, Yatskevich S, Burt A, Bellini D, Kilmartin J, Barford D

EMDB-41963:
Preholo-Proteasome from Beta 3 D205 deletion
Method: single particle / : Walsh Jr RM, Rawson S, Velez B, Blickling M, Razi A, Hanna J

EMDB-41993:
Proteasome 20S Core Particle from Beta 3 D205 deletion
Method: single particle / : Walsh Jr RM, Rawson S, Velez B, Blickling M, Razi A, Hanna J

PDB-8u6y:
Preholo-Proteasome from Beta 3 D205 deletion
Method: single particle / : Walsh Jr RM, Rawson S, Velez B, Blickling M, Razi A, Hanna J

PDB-8u7u:
Proteasome 20S Core Particle from Beta 3 D205 deletion
Method: single particle / : Walsh Jr RM, Rawson S, Velez B, Blickling M, Razi A, Hanna J

EMDB-40572:
Human adenylyl Cyclase 5 in complex with Gbg
Method: single particle / : Yen YC, Tesmer JJG

EMDB-40573:
Dimeric form of human adenylyl cyclase 5
Method: single particle / : Yen YC, Tesmer JJG

PDB-8sl3:
Human adenylyl Cyclase 5 in complex with Gbg
Method: single particle / : Yen YC, Tesmer JJG

PDB-8sl4:
Dimeric form of human adenylyl cyclase 5
Method: single particle / : Yen YC, Tesmer JJG

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more